rs51930060 SNP Detail

Summary

• ID
  rs51930060
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:51370857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGAGAA TAAGAGGGCC
  CTGGGGACTA TATGCACTAA ACTTCAGTAT CAGAGGTCTG ATGGGGAGTG TGGTGGGTCA
  GCTCGTGGAG GAAAAGAACC CTTACAATGG ATCTGGAGAT GTGACCACAT TCTCTGATCC
  TCTTTCTCCT TACGGAACAA GGAAAGGGAT CTGAGTTGAA GAGATCCTAG AGCTTCTGGC
  Y
  AAGAATTGAC TCTGTTCTTC TAACATGACA GATGCTTCTG TGAAGAACAC ACAATCTGAG
  AACAATGCAG AGCTGAACAG TTGGGTGAGA CTCCTGCCCC ATTCACACTG ATAAGAGCAA
  TACTTTTCGC CAGTAAGAAC CACACATTGC CCCTCCATCT GGAAGAGTTT GACTCTGTGA
  TTGCTCCTTC TTGTCTTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52288599	NES15304588	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51930060					SNP	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52288599	NES15304588	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:51370857 () rs orientation: forward

Symbol	Name	Function Class
Gm40645	predicted gene, 40645	within coordinates
Gm49339	predicted gene, 49339	within coordinates
Lilrb4a	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	within coordinates
Tssr93271	transcription start site region 93271	1902 bp downstream
Tssr93272	transcription start site region 93272	1847 bp downstream
Tssr93273	transcription start site region 93273	1576 bp downstream
Tssr93274	transcription start site region 93274	1043 bp downstream
Tssr93275	transcription start site region 93275	910 bp downstream
Tssr93276	transcription start site region 93276	856 bp downstream
Tssr93277	transcription start site region 93277	808 bp downstream
Tssr93278	transcription start site region 93278	772 bp downstream
Tssr93279	transcription start site region 93279	616 bp downstream
Tssr93280	transcription start site region 93280	169 bp downstream
Tssr93281	transcription start site region 93281	121 bp downstream
Tssr93282	transcription start site region 93282	103 bp downstream
Tssr93283	transcription start site region 93283	13 bp downstream
Tssr93284	transcription start site region 93284	295 bp upstream
Tssr93285	transcription start site region 93285	520 bp upstream
Tssr93286	transcription start site region 93286	634 bp upstream
Tssr93287	transcription start site region 93287	996 bp upstream
Tssr93288	transcription start site region 93288	1256 bp upstream
Tssr93289	transcription start site region 93289	1324 bp upstream
Tssr97556	transcription start site region 97556	250 bp upstream
Tssr97557	transcription start site region 97557	73 bp downstream
Tssr97558	transcription start site region 97558	1260 bp downstream
Tssr97559	transcription start site region 97559	1730 bp downstream
Tssr97560	transcription start site region 97560	1826 bp downstream