rs51932679 SNP Detail

Summary

• ID
  rs51932679
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:46386577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTGCTTC TGGCTTTGCA
  GCTGCTTTAG CTTTAGGACG TTAGTTAAGA ACAGGTTTCG GGAGAGCCAA GCATTAGCTC
  GGGATTGAAG GGGATCATAG CTCGCCACCA GGTGCGTGAC AGAGACCTGA GTGGGCAGGA
  GGAATGAAGA AGCGCATTCT GTCTTGTCTT CGTGATTTCA GCCGAAGTTT AAAGATGCCC
  W
  GTAAAAGATC AGTTTCCAAA TGGGCTGGCT GTCTTTGGGG GTAGAAATGG CACTTTCTCG
  TCTCCTATTC TTTTTTGCAT CCTGTTTCTT CAGTCAGCCT TCAGACAAAA CAGGTGTTAT
  GAGACAAGTC CTTGTGGTCT TTCTGAACCA AAAATAGATT CAGAGGTGGC CACATTCAGG
  CAGGCAGTCG TTGTATTGTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60312984	NES15818149	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs51932679					SNP	T	T	T	T	T	T	A	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60312984	NES15818149	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46386577 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11002	CpG island 11002	713 bp distal
Gm59146	predicted gene, 59146	1981 bp downstream
Rr406001	regulatory region 406001	1211 bp downstream
Rr548729	regulatory region 548729	1901 bp distal
Rr548730	regulatory region 548730	1102 bp distal
Rr548731	regulatory region 548731	1376 bp distal
Rr548732	regulatory region 548732	1268 bp distal
Rr548733	regulatory region 548733	556 bp distal
Rr548734	regulatory region 548734	514 bp distal
Rr548735	regulatory region 548735	1859 bp proximal
Sufu	SUFU negative regulator of hedgehog signaling	within coordinates
Tssr156753	transcription start site region 156753	1139 bp downstream
Tssr156754	transcription start site region 156754	1105 bp downstream