rs51933671 SNP Detail

Summary

• ID
  rs51933671
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:52153325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGAACCT CATAAAAGAT
  AAAAGTTGGG TGGGTAGAGA GGGGGAGAGG ATCTGAAGGA AGTTTCCAAA CACATGAACA
  CACTCTCTAT GGCAACACAA GTCGACTGCA CTAGCAGCTG AAGCACGGTC CATGTGCTCA
  GGATGGTGTG GGCCTATACC AAGCTTCCCT CCTAGCAAGT CAGACAATCT CTAGGAGTTG
  S
  TTAACCAGTG TGTACTTATA TTGTCTGGCT ATAAAATTAA GGGCAATGAT GGTATCAATC
  CCACAGTGTT GTCACTAATG TAACAAATAA CTGTGCATTA AGTTTTGCTA AGAAGTAATT
  GTCAGGTACC ATGTCCTCAC TCATGCTAGC CACCGCACCT GCCTGCCTTG TACTTATTAG
  GGTAATAGAA GCAGTGCACC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60215770	NES15721496	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51933671					SNP	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60215770	NES15721496	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:52153325 () rs orientation: forward

Symbol	Name	Function Class
Alcam	activated leukocyte cell adhesion molecule	within coordinates
Gm32597	predicted gene, 32597	within coordinates
Gm60235	predicted gene, 60235	1451 bp upstream
Rr516984	regulatory region 516984	572 bp proximal
Tssr141426	transcription start site region 141426	499 bp upstream
Tssr141427	transcription start site region 141427	190 bp downstream