rs51934802 SNP Detail

Summary

• ID
  rs51934802
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:139410043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCATGTGT GATAAAGTGG
  TTACCACACA GACACTGTTG TAATTACATA GTTGTCAGAA GGCTCTCGGT CAGTCTGGTA
  GAGCATAAAC CAACTTGACA TTTACAATTA ATGCTTTGTG TCCATTAATT GCATATTAAC
  TATTACAATT AGTATAACAA TAATTGCATA AGATCTTTCT CATTTGCAAT TGTAGACCAT
  Y
  ATTGTAACCT TATATTTCTA TGCTTGATAT AGGCTGGATG TAGAAAATAT AAAGCTAAGA
  AATACTTATC CAAAGTGGAA GCTGCCTGCA GGATTCAAGC TTGGTATAGG CGTTGGAGAG
  CGCACAAGAA ATATCTAACT TTATTGAAAG CTGTTAACAT TATTGAAGGT TACCTCTCTG
  CACAGCTGGC GAGAAGGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60809596	NES16481651	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51934802					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60809596	NES16481651	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:139410043 () rs orientation: forward

Symbol	Name	Function Class
Aspm	abnormal spindle microtubule assembly	Intron
Tssr235	transcription start site region 235	1217 bp upstream