rs51935946 SNP Detail

Summary

• ID
  rs51935946
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:20513628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGAAGAGT GTGACTGACC
  TCAGGACTGG CCTTGAGTAC CAGGTAGGCG TCTGGCATAG CCAGTAACCT GTTTTCTTTC
  TGGTTGGTAG CATTTCTGGG GACCACCAAC TGGCTGAGGC CCAGGGACAG AGACGTCTGC
  TCCAGCTAAA AGGTTAGTTG TGATGTACGT GGCCAGTTGG CACTGTGTAA GCTAAGATGA
  R
  CCTCAGCCCC ACAAGCCAGA GAACTTGGCG AGGTCCCTGG CACTCCCACT TCCTCAAAGC
  TATGAGACAG GAGTGTTCTC CTTATGTGAC TAGGCATAAG TTCCAAGTGG GGAGGGGACT
  GGCTCAGCAT CCGGAGCCAA AACAAGAATA GAACTGGGAG CTGGGCCTGA AGCAGTTCAG
  GCTTTGGGCT CTCTGCATCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60198410	NES15711485	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51935946					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60198410	NES15711485	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:20513628 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8083	CpG island 8083	1122 bp distal
Cpgi8084	CpG island 8084	777 bp proximal
Eif4g1	eukaryotic translation initiation factor 4, gamma 1	1995 bp downstream
Fam131a	family with sequence similarity 131, member A	within coordinates
Rr325071	regulatory region 325071	427 bp distal
Rr325072	regulatory region 325072	within coordinates
Tssr137487	transcription start site region 137487	1556 bp downstream
Tssr137488	transcription start site region 137488	1531 bp downstream
Tssr137489	transcription start site region 137489	122 bp upstream
Tssr137490	transcription start site region 137490	139 bp upstream
Tssr137491	transcription start site region 137491	163 bp upstream
Tssr137492	transcription start site region 137492	1301 bp upstream