rs51936136 SNP Detail

Summary

• ID
  rs51936136
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:4557974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAAGTTGT GGACTGTGTT
  GAGGCCAAGA TTAATGTGCA AACACCATTA GAATTAATGG ACTACTTTGC ATTCAACCAT
  TTCGTTCCCT TTTACATGAG CTGTACTGAT TGTTAAAGTT TGGTTTTTTG TTTGTTTGTT
  TGTTTGTTTG TTTTTTAAAG TAAGAAGCGT AATGGAAGAT AGATGGTGGC TTTAAGTTTG
  R
  AAGTTGACCA TGGGTTAGAA GAAATACATT TTCTTTCACC ATTTTATATA ACTATGTAAA
  ATATCCATCC CTGCTTGAGA ATTTTTAAAT TTTCATGTTT ATCAAAAATT AAGAAGCATG
  CATGAATTTA GCTACTTAAA GAAATACTCC TGGCTGTTCT TATGGGGTAA ACTCTAGGTG
  TTCTTCAAGG ACGTGGAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss61339531	NES16950049	PERLEGEN	MM_PANEL2	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs51936136					SNP	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61339531	NES16950049	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4557974 () rs orientation: forward

Symbol	Name	Function Class
2900045O20Rik	RIKEN cDNA 2900045O20 gene	225 bp upstream
Rr265385	regulatory region 265385	1626 bp proximal
Rr267451	regulatory region 267451	1840 bp distal
Rr267453	regulatory region 267453	within coordinates
Tssr112556	transcription start site region 112556	734 bp downstream