rs51937355 SNP Detail

Summary

• ID
  rs51937355
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53379470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGATGCTGA TATGTTTCTA
  TTCGGTCAAC AGTCGTTGGC TTTAAGGAGA GCCTTACACA GGAAAGCACG TTTGGGACAA
  TGATGAAATC ACTCAGCATT TTAACACTGA GTTGGATTCC TGTGCACTAC CATCTGGAGG
  ACAGTACCTC ACTCTGGTAA AGTGAGTACA CGTGATGTGC TGTCTCTTAA AATTCCAAAG
  Y
  GTTCATGGAC GGCAATTTAT TTGATTCTCA GGTCAGTTCT ATGACATGTG CAGCAAAGGG
  CAGTTTTGTG GATAATCCAA CAGAGACATG GAATCTTTTA GGAAACACCA GTGTCCTATG
  CCTAGCTATG ATGGCAGTTT AGTTGTCAGA CTCCAAGTTC AGATCTTATT TTATGACAAA
  GTGGTGCTGT CTACCATCGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss137751801	ENSMUSSNP3083753	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss324042722	CHEV_12_54433674	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51937355					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53379470 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr267617	regulatory region 267617	870 bp distal