rs51937760 SNP Detail

Summary

• ID
  rs51937760
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:64086499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTTCCTGC CTGCATAAGT
  AGCCTTTGCA GAGATTAAAG TCACTTGGAA AGTAGGTGAC AGGGTGCTGA GATGAATGCT
  ATCCTAAAGC CTGTGGGGCC AATTTACTGT GAGGGATTAC CAAGGGACTG AAGAATCTCC
  ATGCTCTTTG GGATTCCACT TTGTTTTCAG ATCGTGGGAG CTAAGCCCCT ACTGGCCCTT
  M
  AGAAAACAGC TACGAGAAAG TAAGCCCTCA GCCCGGCGCT GGTCTCCGCA GTCGGCGGTG
  ACGTCATCAC CGCGCGCCTA GTAGAAGGCA GCGCCCTAAG GAAGTGGAAG GGGATGTTGA
  GTCGACTGCA GGAGCTCCGC AAGGAGGAGG AAACCCTGCT GCGTCTAAAG GCGGCTCTAC
  ACGACCAACT GAACCGCCTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61410339	NES16794830	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51937760					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61410339	NES16794830	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:64086499 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21924	CpG island 21924	within coordinates
Rpl4	ribosomal protein L4	551 bp downstream
Rr368801	regulatory region 368801	36 bp upstream
Rr681196	regulatory region 681196	within coordinates
Rr681197	regulatory region 681197	133 bp proximal
Rr681198	regulatory region 681198	267 bp proximal
Snapc5	small nuclear RNA activating complex, polypeptide 5	57 bp upstream
Tssr85601	transcription start site region 85601	1819 bp downstream
Tssr85602	transcription start site region 85602	1765 bp downstream
Tssr85603	transcription start site region 85603	1479 bp downstream
Tssr85604	transcription start site region 85604	1437 bp downstream
Tssr85605	transcription start site region 85605	861 bp downstream
Tssr85606	transcription start site region 85606	801 bp downstream
Tssr85607	transcription start site region 85607	54 bp upstream
Tssr85608	transcription start site region 85608	72 bp upstream
Tssr90132	transcription start site region 90132	1406 bp upstream
Tssr90133	transcription start site region 90133	838 bp upstream
Tssr90134	transcription start site region 90134	768 bp upstream