rs51937973 SNP Detail

Summary

• ID
  rs51937973
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:82767677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAAACTCA CATACATGCT
  TTATTTAAAT TTGGTTTGTT TTGGGTTTTT GTTTGTTTGT TTTTATTTTG GTTTTTCGAG
  ACAGGGTTTC TCTGTGTAGC CCTGGCTGTC CTGGAACTCA CTCTGTAGAC CAGGCAGGCC
  TTGAACTCAG AGACCCGCCT GCCTCTGCCT CCCGAGTGCT GGGATTAGAG GCATGCAGCA
  M
  CTGAGATAGT AAACAGATCA ACAGACTGGT GCTATACCCT AAATTAAGTA TTAGCAATGA
  TTAAAAAAAA GCTGTAGAAC TAGCAGAGTG TGGTACACAC CTATAATCCC AGTACACAGG
  AAGCAGAAGC AGGAAAATCA TTCCAAGTTT GAGTCCTAGC AAACGAAGAA CCTTTGAGGC
  ATCACTGTAT GAAGAAACCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	PWD/PhJ
ss63573920	NES17026914	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	PWD/PhJ
rs51937973					SNP	C	C	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63573920	NES17026914	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:82767677 () rs orientation: forward

Symbol	Name	Function Class
Tcf20	transcription factor 20	within coordinates
Tssr135590	transcription start site region 135590	909 bp downstream