rs51938659 SNP Detail

Summary

• ID
  rs51938659
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121053341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATTAACA GAAGTCTTAA
  GCATAGATTT TTAAATTTAA AAAGAACTGC TTCGTGGCAA TACCAATGAC TTCCACCTTT
  TCCCATAACC CGCCATCCTT TACTTTTTCC TCATCGTCCC TCCCTATATT CTCCCCAACA
  GTTCAGAAGG CACAAAGAGG GTCATTTATA GTCAGTAGGC ACTTTATGTT TTTTAAAAAA
  Y
  TTAAAATTCT CTTCAAATTT TTAAAGATTT GGCAATAATA AGCTTGAATC CTTTCTTTTT
  AAAGCATCAC TTATTTGTCA TAGTAGGGGC TGAACGACAG TCCTCACTTA GGCAAGCATG
  ACAACTGGGC TCGAGCCCAG CTAGCTCACT AAAAATTGAC AGCCACTGGC AGAGACAAAG
  AACTGTGAAT GGAGCACAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147381967	ENSMUSSNP5536177	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320482326	CHEV_2_121048596	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51938659					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121053341 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr373765	regulatory region 373765			915 bp downstream
Rr563789	regulatory region 563789			104 bp proximal
Rr563790	regulatory region 563790			359 bp proximal
Trp53bp1	transformation related protein 53 binding protein 1			Intron
				Noncoding-Transcript-Variant