rs51939121 SNP Detail

Summary

• ID
  rs51939121
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:16592151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCATGCA GAGACTGCAT
  CTATCAGGAC TAGCTACACC TTGATCCAGC TGCACTCCAT AAACCATGCC TCCTTACTTC
  TCTGTATGCC CTAATCTCAC CCTTCAGGTC AACTCTGATA TAGTAGCCAT GCTTAGCTTC
  CAGGAAGCTG CTGTCTTCCC ACTGGAAAGC AGAATCTATA TGACCACAGC TTTTTGTCCA
  S
  GCCTCTGTGT ATGTCTGTCT GTCTTGTCTT CATTCCCTGC CACTCCAGTT AGGTCTAGAG
  CACTTGCTGC TCAAGTGTAA TGGCTTGAGT TCAGATCTCC AGCAGATACG TTTTTTAAAA
  ACCAGGGATG CCCACATATC CCATACAGCA CTTACTGGCC AGACGTAGAC AGGCAGAGTC
  TTATTTTGTT GACTGAGTAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60700035	NES16342186	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51939121					SNP	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60700035	NES16342186	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:16592151 () rs orientation: forward

Symbol	Name	Function Class
Cpgi55	CpG island 55	1735 bp distal
Rr28890	regulatory region 28890	1350 bp distal
Stau2	staufen double-stranded RNA binding protein 2	1815 bp upstream
Tssr11040	transcription start site region 11040	1888 bp upstream
Tssr11041	transcription start site region 11041	1832 bp upstream
Tssr11042	transcription start site region 11042	1794 bp upstream