rs51939618 SNP Detail

Summary

• ID
  rs51939618
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156908648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTGT TAACACAGTG CTTTTCAGCC
  H
  AGCCCCTGTG GCTGGCCATA GCTCC                                      
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145814241	ENSMUSSNP5681983	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
ss320073539	CHEV_1_159011209	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51939618					SNP	T	T	A	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156908648 () rs orientation: forward

Symbol	Name	Function Class
Gm28694	predicted gene 28694	within coordinates
Gm30568	predicted gene, 30568	within coordinates
Rr421335	regulatory region 421335	943 bp distal
Rr421336	regulatory region 421336	1525 bp distal
Rr421337	regulatory region 421337	314 bp proximal
Rr421338	regulatory region 421338	403 bp proximal
Rr421339	regulatory region 421339	525 bp proximal
Rr421340	regulatory region 421340	564 bp proximal
Rr421341	regulatory region 421341	1019 bp proximal
Rr421342	regulatory region 421342	1105 bp proximal
Rr421343	regulatory region 421343	1326 bp proximal
Rr421344	regulatory region 421344	1776 bp proximal