rs51939665 SNP Detail

Summary

• ID
  rs51939665
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127683537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAACGTTTT TTTGCAGATA
  AGTGGTTGCT ATCGAAGAGC TGTGAGCCCA GAGCAGACAA ACCTAAAGAC AGGAGACTAA
  GGTGCAGGGA GGCACAAAGA TAAGGCTTCT ACTTATGCTC CCTGAGCCAG CCTGACAGCC
  ATGGCGTCTT CAGTTGGCCC TTTAATCTTG CTTTATCATT TCTCCTAAGT AGGGAATTGA
  R
  AAAATGTCAT CTGGGATTAT TTTTGCTCCT GTCAAAAATT ATTGACAAAC TGGGGAGAAT
  CAACTTAAGA TCTTCATTTA AAAGGAAAAC AAAACAAAAC AAACCTTGTC TCAAACAACA
  ACAACAACAA CCCAACAAGT TGGTAAGGTT TTTTCCCTTA GAGAATTATA AAACAATTAA
  TCTTAGAGAA TATTTACTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135874298	ENSMUSSNP7166022	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss320957928	CHEV_3_127592806	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51939665					SNP	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127683537 () rs orientation: forward

Symbol	Name	Function Class
Fam241a	family with sequence similarity 241, member A	Intron
Rr584892	regulatory region 584892	within coordinates
Rr584893	regulatory region 584893	242 bp proximal
Rr584894	regulatory region 584894	908 bp proximal