rs51939932 SNP Detail

Summary

• ID
  rs51939932
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127202906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATCAGATC AGCCCCGAGA
  CAGCCCATCC CATCCGCCAG CCCCTTCCAC GCTTGTGAGT TGCATCACTC TGAGCCCTGG
  GTTGCATTGG AGCAGGTGGT GTACAGAGTC AGGAACTGTT GTTTTCTTAC AAGATATTTT
  TGGGTGGTCT GGTTCCTTCT GTTTCTAGCA GACAGGGTAA AGCAGCCTAC ACTTGCATTT
  R
  GATTTATTCA CAACCTGTAT GTAACAGAAG CACAGCAGTG ACTGGAGACC CACTCCTGAG
  TCAAGATGCC AATGCTATGG GAGTGACCTC ATCTGCAAAA GCCACCGACA CTGCCCAAAC
  CACCTTGCAA CACATCATCC ATCTCGTGCA TGCATGCGTG TGCCTGTGCG TGAGTGTGTG
  CGTGTGTGTG TGTGCATACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135862644	ENSMUSSNP3262400	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss320953859	CHEV_3_127112175	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51939932					SNP	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127202906 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Cpgi13790	CpG island 13790	342 bp distal
Gm52631	predicted gene, 52631	within coordinates
Rr584772	regulatory region 584772	1959 bp distal
Rr584773	regulatory region 584773	301 bp distal
Rr584774	regulatory region 584774	within coordinates
Tssr35571	transcription start site region 35571	370 bp upstream
Tssr35572	transcription start site region 35572	276 bp upstream
Tssr35573	transcription start site region 35573	249 bp upstream
Tssr35574	transcription start site region 35574	214 bp upstream
Tssr35575	transcription start site region 35575	193 bp upstream