rs51940644 SNP Detail

Summary

• ID
  rs51940644
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115569252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGCCCCACCT CCAGTGTTGG TGAGGGACGC AGCAACTACT
  ACTCTTTCTC TGTGAGTACT AATCTTGGTA CTTCTGGCTT TGGGGTGGAG CCGGGCCCCT
  M
  TCCTACCCCC AGATTGAATG AGTCAGGGCT ACAGTTACCC ACGGTGGCTT CTCTGAAATC
  TAACTACTAT TTGACTCTGT GACACCCCCT TTTCCATTC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss149124659	ENSMUSSNP2715409	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321654897	CHEV_5_115881202	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51940644					SNP	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115569252 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16370	CpG island 16370	231 bp distal
Gm43231	predicted gene 43231	1718 bp upstream
Msi1	musashi RNA-binding protein 1	within coordinates
Rr618242	regulatory region 618242	1700 bp distal
Rr618243	regulatory region 618243	1584 bp distal
Rr618244	regulatory region 618244	367 bp proximal
Tssr48228	transcription start site region 48228	1676 bp downstream
Tssr48229	transcription start site region 48229	1658 bp downstream
Tssr48230	transcription start site region 48230	1625 bp downstream
Tssr48231	transcription start site region 48231	1580 bp downstream
Tssr48232	transcription start site region 48232	1510 bp downstream
Tssr48233	transcription start site region 48233	1486 bp downstream
Tssr48234	transcription start site region 48234	1459 bp downstream
Tssr48235	transcription start site region 48235	1423 bp downstream
Tssr48236	transcription start site region 48236	1201 bp downstream
Tssr48237	transcription start site region 48237	857 bp downstream
Tssr48238	transcription start site region 48238	564 bp downstream
Tssr48239	transcription start site region 48239	166 bp upstream
Tssr48240	transcription start site region 48240	814 bp upstream
Tssr48241	transcription start site region 48241	827 bp upstream
Tssr52797	transcription start site region 52797	1684 bp upstream