rs51942065 SNP Detail

Summary

• ID
  rs51942065
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:127702480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCGGAGAA AGAGGAGATG
  TGCCGGGGAA GGCGGGCCGG GAGCCCGCGT TGTATAACCT GTGTTTGGGA GCGCGTGATG
  CGGGAGGGAA TAGCAGTGCT TCCCTGGCGA GAGAGGAGGA ATCCGGGATG AGCAAAGCCA
  AGGGGCGGCC CCTTCCACTT TCGGAAGTCA GAAAAGGCCT TGAGACGTAG AGAGGTCGCA
  R
  ATGTTCCACG GAAAGTGTTT TCCGAGGCTT CCGTGCCGGC TCCAGGGCGG CTCTGTTGCG
  CCGGGGGAAC GCACGTAGAT GTTTCATGTT CTTTGGGTGT GTGGCGCGCG CCTTTCGACT
  ACTTTATTTC TACTGTACTA AGCTGTAACC TAATTGCAAA TAATTCCTGG GCTCTCCCTA
  CGTAGCGTAT TAGAATAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60798951	NES16471948	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51942065					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60798951	NES16471948	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:127702480 () rs orientation: forward

Symbol	Name	Function Class
2900009J06Rik	RIKEN cDNA 2900009J06 gene	689 bp upstream
Ccnt2	cyclin T2	Intron
Cpgi690	CpG island 690	within coordinates
Rr396250	regulatory region 396250	601 bp downstream
Rr417683	regulatory region 417683	889 bp distal
Rr417684	regulatory region 417684	569 bp distal
Rr417685	regulatory region 417685	121 bp proximal
Tssr8489	transcription start site region 8489	505 bp downstream
Tssr8490	transcription start site region 8490	471 bp downstream