rs51942101 SNP Detail

Summary

• ID
  rs51942101
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:51136093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTAAATTG TACTATTTAC
  AACTATAGCA TGCCTAAAAT ATCACTTGAA AGATGTAGTA TTTTGTTTTC CTCCAAACTG
  ACGAGGAAAC CAGAAGCTCT CTGGTTCCCC AGATATATTG GAGAAAATCA CATTTCTTTA
  TAACAAATGA TTCTAGCAAC AGAATCAGCA AACTCCAACG GTACTTAGAT GTTGCTTTTT
  Y
  CATACACTAG GGGGCACTCG TGATTTATTC AACGCTACTC TTAGACTTTT ATTAAAAATT
  CAGTGTTGCC AGCAACTTTT TACCTTTGAA TGGGCAGGAT GGAGTAACAA CCAAATGTTC
  AAAAGATTGC GTTTAAGCAG AGAATGGTTA AAATATAGTC TCTGTAGCAC CCAGAAGGAG
  AGAAGTGTCT ATTGTCTACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60462108	NES16447915	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51942101					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60462108	NES16447915	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:51136093 () rs orientation: forward

Symbol	Name	Function Class
D16Mit157	DNA segment, Chr 16, Massachusetts Institute of Technology 157	295 bp distal
Gm59906	predicted gene, 59906	within coordinates
Rr404859	regulatory region 404859	within coordinates
Rr516901	regulatory region 516901	within coordinates
Rr516902	regulatory region 516902	within coordinates
Rr516903	regulatory region 516903	115 bp proximal