rs51944690 SNP Detail

Summary

• ID
  rs51944690
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134070192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCAGTCTGGC CTCGAACCTA GAGATCTGCC TGACTCAGCT
  TCCCCATTGC TGGCCTTAAA TGTGTATGCC ACCACGCCAG GCCGATTTTC TAGAAACTTG
  R
  ATTCCAAGGC TTTTTTTTTT CTACAGGATT CCAGGAAGAG TGGGTTTTGT GGTCATCCAG
  TCCTAACTTA GCAACTCTAG GCAACTCTTA GCAAGTGCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147525933	ENSMUSSNP3893444	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss321346953	CHEV_4_133898796	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs51944690					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134070192 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15035	CpG island 15035	41 bp proximal
Rr601645	regulatory region 601645	within coordinates
Rr601646	regulatory region 601646	1926 bp proximal
Slc30a2	solute carrier family 30 (zinc transporter), member 2	300 bp upstream
Tssr39548	transcription start site region 39548	262 bp upstream
Tssr39549	transcription start site region 39549	317 bp upstream
Tssr39550	transcription start site region 39550	612 bp upstream
Tssr39551	transcription start site region 39551	642 bp upstream
Tssr39552	transcription start site region 39552	717 bp upstream
Tssr39553	transcription start site region 39553	751 bp upstream
Tssr39554	transcription start site region 39554	802 bp upstream
Tssr39555	transcription start site region 39555	1001 bp upstream
Tssr39556	transcription start site region 39556	1121 bp upstream