rs51944826 SNP Detail

Summary

• ID
  rs51944826
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126572875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCCAAAA CAACTCACGA
  AACTGACAAA TCTCACAAGC AGTCAATTTG ATGAAAACTA GTTTTCTTGT TTGTTGACAT
  AGAAACAAAA TCATTTGGCT GATAACGTTT TTGTATTCTC AGAGAACCGT TTTGGCGCTT
  GGGAGGGCCA TTGTTTCCCA ACTGTTTGGG TGGAGACATA GGCTCCAAAT TCACTCTTCA
  S
  CACCCCCCCC CCCCAAAGCA GGAAGACTTA GAAAGAACCA GTCTTCCATG TGCATTCTAG
  TCCAATCTTA TTCATCCAGA TGTCTGGGTG GGCTAGGCTT CACTGTACAT AATACTCAGT
  ACGCTTTCCC TAAGCATCTC CCCACTCAGT TTCTTAAACT CCATGAGGAA GTCCAGGGAA
  ATTGAAAGCT CTGTCTCAAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135841040	ENSMUSSNP1859487	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51944826					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126572875 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Tssr31579	transcription start site region 31579			1136 bp upstream
Tssr31580	transcription start site region 31580			1171 bp upstream
Tssr31581	transcription start site region 31581			1182 bp upstream