rs51945611 SNP Detail

Summary

• ID
  rs51945611
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:123031126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCAGAGAGAA GAAGCTTGAA TTTATCTGTT AAGATCGCAC
  AGGCCAAGGG GAGCATAGGT GTTCTAGGGA ATGCCCGATT TCTTCTCAGC AATAAACTCC
  K
  TAAGAAAAAC AAAAGCAGAC TATAAGCAAT AATGACTTAA GCCTCTGCAA GGCTGTAATG
  CAACAAGTGT GTTTTCCATC ATCAAGGTTC TTAATTACA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147657947	ENSMUSSNP4187654	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51945611					SNP	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:123031126 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2311	CpG island 2311	1055 bp proximal
Gm4129	predicted gene 4129	within coordinates
Gm55025	predicted gene, 55025	1655 bp downstream
Rr224370	regulatory region 224370	within coordinates
Rr402316	regulatory region 402316	22 bp downstream
Tssr99665	transcription start site region 99665	1246 bp downstream
Tssr99666	transcription start site region 99666	1695 bp downstream
Tssr99667	transcription start site region 99667	1751 bp downstream
Tssr99668	transcription start site region 99668	1755 bp downstream
Usp15	ubiquitin specific peptidase 15	within coordinates