rs51945753 SNP Detail

Summary

• ID
  rs51945753
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:19489674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGCAGCCT GTCTAAACCC ATCAGTGCCC ATAACAAGTG
  AGTAAGTAGA TGACTTTAAA AGCCTGACTT ATCTTTTATC ATGTTTTCTT TGATGATTAA
  R
  AATAAGAGAC ATATGAATAA ATAAAAGTTT TTTGTTAATA TAGGTTAGGT TCTACCACTG
  TGCCACTCAT TAAAGTCTAT ACTTGAATTG GTAATTCAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148742757	ENSMUSSNP6551795	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs51945753					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:19489674 () rs orientation: forward

Symbol	Name	Function Class
Tcrg	T cell receptor gamma chain	within coordinates
Trgc2	T cell receptor gamma, constant 2	within coordinates
Tssr118532	transcription start site region 118532	331 bp downstream
Tssr121559	transcription start site region 121559	1115 bp upstream
Tssr121560	transcription start site region 121560	1053 bp upstream
Tssr121561	transcription start site region 121561	511 bp upstream
Tssr121562	transcription start site region 121562	657 bp downstream
Tssr121563	transcription start site region 121563	798 bp downstream
Tssr121564	transcription start site region 121564	1864 bp downstream