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rs51946655 SNP Detail
Summary
  • ID
    rs51946655
  • Variation Type
    SNP
  • Alleles
    C
Genome Location and Flanking Sequence
  • Location
    Chr2:109749859 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCGTGTTGTG TGGCCTATTG
    CATGATTAAA TCAGGAGCAG TCAAAGACCT GCTAGAGAGG AAGGGGCCCC GAGAGGCCCT
    CTGGCAAAGG AAACTTCCTT TTTACCTTCA AGCTATCAAA AGAGACCTCT TAGGCGTAGC
    TTTAAAGGAA TAACAGATCG TGTGAAGGGA AAACTCCCTT TTAGGCAAGC TGGGGCATCA
    C
    TGTATTTCCA GGTGGGTGGT GCCGAGGCAT TCGGCTGGCC CTCTCAGGTT GGGGATGTGG
    AGAACTGAGA CCCTTGGCTT TGCACCCTAG TCTCAGATTT TGGCCCAGTC TTAGGTGTTG
    TTGATGCCTG GAAAGACCCT TTCTTTCGAA ATGATATTTG ACTTTTCACC AAACCATGTG
    AAGCGATTTG CTCATAGAGG                                            
    
    C = C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
ss147206219 ENSMUSSNP6465177 ENSEMBL ENSEMBL_Sanger f SNP C
SNP Consensus Information
SNP Consensus Type
A/J
rs51946655 SNP C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:109749859 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi12039 CpG island 12039 653 bp distal
Lgr4 leucine-rich repeat-containing G protein-coupled receptor 4 Intron
Rr397176 regulatory region 397176 1855 bp downstream
Rr562509 regulatory region 562509 1857 bp distal
Rr562510 regulatory region 562510 within coordinates
Rr562511 regulatory region 562511 1730 bp distal
Rr562512 regulatory region 562512 1691 bp distal
Rr562513 regulatory region 562513 1303 bp distal
Rr562514 regulatory region 562514 507 bp proximal
Tssr19307 transcription start site region 19307 1922 bp downstream
Tssr19308 transcription start site region 19308 1876 bp downstream
Tssr19309 transcription start site region 19309 1858 bp downstream
Tssr19310 transcription start site region 19310 1828 bp downstream
Tssr19311 transcription start site region 19311 1778 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory