rs51947753 SNP Detail

Summary

• ID
  rs51947753
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77958891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGATTCCGC AGAGGAGCTG
  GGCTTGAAGA ATTGCATTCG TTGTCAGGTT TGATACACTT AGAATTAGAG ATGGCTTTCA
  GTGTTTCTGG TTTAGGGCTG CTAGCTGTCT AAAAACTATC TCAGTAATTT CCATCCCCCC
  CCCCCCTCGG TGTTTGCACT GCCATGAGTC TCCCTGTCTG CCTTCTCGCT CACACACACA
  S
  AGGATAAAAC GCATCTACTG TAAAACAGTC GCTCTTGGAT TCAATCTATA AAACTATCAG
  GAAAAAAAAA TCTGTATTTC TTTTCAGAGT TTTGTTTTGT TTTGTTTTTC CCTCAATATC
  CTTTTAAGTT AGATGTCCTC TTAGCATTAA GGAGGGGAAA GTTCAGAGGC ACACCATAGA
  ATATTCATCA CATGGCTAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61428321	NES16810787	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G		C	G	C	C		G
ss323015297	CHEV_9_77899416	CHEVERUD	SCREENING_POP	f	SNP								G					C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51947753					SNP	G	G	G	G	G	G	G	G	C	G	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61428321	NES16810787	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77958891 () rs orientation: forward

Symbol	Name	Function Class
Gcm1	glial cells missing homolog 1	349 bp upstream
Tssr86256	transcription start site region 86256	329 bp upstream