rs51948026 SNP Detail

Summary

• ID
  rs51948026
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43879038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGC TATGAGACGG ACTCTTCAAT
  Y
  ACTCTGTTCC TCATAATCGC AAAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss62747678	NES17340457	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	T	C	T	T	T	T		T	T	C	T		C
ss145670515	ENSMUSSNP1610555	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss325395753	CHEV_17_43705096	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51948026					SNP	T	T	T	C	T	T	C	T	T	T	T	T	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62747678	NES17340457	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43879038 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9171	CpG island 9171	176 bp proximal
Gm64747	predicted gene, 64747	within coordinates
Pla2g7	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	within coordinates
Rr527121	regulatory region 527121	within coordinates
Rr527122	regulatory region 527122	133 bp proximal
Tssr144685	transcription start site region 144685	142 bp downstream
Tssr144686	transcription start site region 144686	10 bp downstream
Tssr144687	transcription start site region 144687	5 bp upstream
Tssr144688	transcription start site region 144688	143 bp upstream
Tssr144689	transcription start site region 144689	300 bp upstream
Tssr144690	transcription start site region 144690	335 bp upstream
Tssr144691	transcription start site region 144691	355 bp upstream
Tssr144692	transcription start site region 144692	411 bp upstream
Tssr144693	transcription start site region 144693	459 bp upstream
Tssr144694	transcription start site region 144694	494 bp upstream
Tssr144695	transcription start site region 144695	542 bp upstream
Tssr144696	transcription start site region 144696	559 bp upstream
Tssr144697	transcription start site region 144697	1249 bp upstream
Tssr148130	transcription start site region 148130	357 bp downstream
Tssr148131	transcription start site region 148131	1801 bp downstream
Tssr148132	transcription start site region 148132	1824 bp downstream