rs51948221 SNP Detail

Summary

• ID
  rs51948221
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:149211944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTATGGTCT CAATGACACT
  GTAAGGGAAA TGTACTAGAC CTTAACTCTT GCTTTCTTGT TTCTTGATTT TCATAGAATT
  AGAGGCGTGA ATACCTTGTG GAAGAGATTA AAAGGTAAAA TTGTATTTAC AGGTAAGTTT
  GCCTTTTATA AAGCCTATCC TGGTTCTACT GGATGACTAT TTGCATTGTA CCGTGGACTA
  R
  CTTATTTTAG AATAAAGAGT ATCATTGAAT CAACACTAGT TAAACCTACA GAACTTGCCT
  AGCATGTGCT TGCCTTCAAT TTTTGCATTT GGGAGACCAA GTCAGACAGA TCTTTGAGTT
  AAAGGCTAGC CTAATCTACA TACCAAATTT CAGTTTAGCT AGGACTGCAT AGTGAAAGAC
  TCAAAAAACT ATCACCAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ
ss60961287	NES16169793	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ
rs51948221					SNP	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60961287	NES16169793	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:149211944 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18192	CpG island 18192	573 bp distal
Gm56997	predicted gene, 56997	771 bp upstream
Resf1	retroelement silencing factor 1	within coordinates
Rr380294	regulatory region 380294	394 bp downstream
Rr380295	regulatory region 380295	1044 bp upstream
Rr641719	regulatory region 641719	962 bp distal
Rr641720	regulatory region 641720	1104 bp distal
Rr641721	regulatory region 641721	1055 bp distal
Rr641722	regulatory region 641722	782 bp distal
Rr641723	regulatory region 641723	281 bp distal
Rr641724	regulatory region 641724	177 bp proximal
Tssr59650	transcription start site region 59650	1128 bp downstream
Tssr59651	transcription start site region 59651	1008 bp downstream
Tssr59652	transcription start site region 59652	964 bp downstream
Tssr59653	transcription start site region 59653	888 bp downstream
Tssr59654	transcription start site region 59654	691 bp downstream
Tssr59655	transcription start site region 59655	622 bp downstream
Tssr59656	transcription start site region 59656	111 bp downstream
Tssr64179	transcription start site region 64179	796 bp upstream
Tssr64180	transcription start site region 64180	761 bp upstream