rs51948940 SNP Detail

Summary

• ID
  rs51948940
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:11137025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTGTAGG CATCCAGCCT
  ACCCTTGCTC TCTCTATGGA CTTAAAAGCT GTTCCTCAAA CCCGTCATTT TCCACAAGTA
  ATAAACAGTG CTTAAACACT GAAAAGAAAT TTGTCCCATC TTTTCGTCTC TTACTTTTCT
  CACTATGGGA GTTACTCCCC CCCCCTTCTC TGTTTCCCAG AGTAATTTCT TCCTTCTCAT
  Y
  TATTGTAACC CCCTCTCCTG GCTTAGATGC AGTCACTTGT GTGGAAAGCT CTAGTAAACA
  ATGTAATTGG AAAGCTGGTG ACTAGATGCT AGAAATGGAA TGTGTATAGT GTGGTGTGGT
  GTGTGTGTGT GTGTATTGTG TGTGTGCAGT GAAACTCTGG ATTTTAAATA ATGTTTAAGT
  AAAATATGAT TACCCTTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss62628154	NES17310272	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs51948940					SNP	C	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62628154	NES17310272	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:11137025 () rs orientation: forward

Symbol	Name	Function Class
Adamts12	ADAM metallopeptidase with thrombospondin type 1 motif 12	within coordinates
Rr390347	regulatory region 390347	1575 bp upstream