rs51949426 SNP Detail

Summary

• ID
  rs51949426
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:67551966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCAC ACACCTGCAG ATTCCTAAGT
  W
  TAGGAGTTAT TGTTTAGATT TTGTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148601373	ENSMUSSNP5304254	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321565126	CHEV_5_67785862	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51949426					SNP	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:67551966 () rs orientation: forward

Symbol	Name	Function Class
Bend4	BEN domain containing 4	within coordinates
D5Ncnp4	DNA segment, Chr 5, National Center of Neurology and Psychiatry 4	645 bp distal
Rr612661	regulatory region 612661	139 bp distal
Rr612662	regulatory region 612662	186 bp proximal
Tssr46579	transcription start site region 46579	1083 bp upstream
Tssr51234	transcription start site region 51234	264 bp upstream