rs51950018 SNP Detail

Summary

• ID
  rs51950018
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134127222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTAAAGA AAAAGAAGGC
  TGGGAGTACT TGAGTGTTAA GACTGTCTGC CTACTATGTA CAAAGCTCTG GGTTCCATCC
  CCACCACAGC ATAAACCAGA TGTGGCTCTG TACAGGCAAC CGAAATGGAG GCGAAAAGAT
  CAGAAGTTCA AGGTTATCTT CAACTATAGA TAGACTTGAT GAAGGATAAC ATGAGATAAA
  Y
  GAGACTCTGT CTCAAAACAA AAGAAAAATA GAGCTATCAG TTATTTATTG AAATTACGTG
  TGTGCACGCA TGTACAAATC AGAGGAACAA CCTGCAGGGT TCCATTCTCT CCTTCCAAGG
  TCCAGAAGAT CGAACTCAGG TCAGCAAACT TGGCAGCGTC TTTACCCACT GAGCCATCTC
  GAAGGCCCAA TCTTTAACTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss144500647	ENSMUSSNP982232	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs51950018					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134127222 () rs orientation: forward

Symbol	Name	Function Class
Castor2	cytosolic arginine sensor for mTORC1 subunit 2	1365 bp upstream
Cpgi16713	CpG island 16713	737 bp proximal
Gm15627	predicted gene 15627	29 bp downstream
Rr621932	regulatory region 621932	283 bp proximal
Rr621933	regulatory region 621933	804 bp proximal
Tssr49079	transcription start site region 49079	1309 bp upstream
Tssr49080	transcription start site region 49080	1321 bp upstream
Tssr49081	transcription start site region 49081	1384 bp upstream