rs51951457 SNP Detail

Summary

• ID
  rs51951457
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:53626438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGCGGACC GCCCGCTGAA
  CTGGGGTACC AGGGGGGTCA AGAGCATCAT CCTGTTAACA CCCGTTCCCC AGCCCCTCTG
  GGACCCCTCG CGCTGGTCCA GCCCGGATCC CGTCCCAGAC GCGCACTCAC TGGGCGGCGG
  GGAGTATCTG CCGGGCTCCT GTATCCACGG TGCTCCGTCT TCGGAATTTT CCGACTTGAC
  Y
  GAGGCGGTCT CGAAGGGCTT GACGAGAGGC CCGGGACTGT GAGCGTCCCG GACGCCGTGT
  CCCGGCAGCA GCAGCGGCCG CAGGACAGCG CCAGCCGAGG CGCAGTCGGG TGGCACCGCG
  GGCGATTCCT TGGGCGGCTT CTTGTCGGAC ATGAGCGCCT CCACGCTGAA GGGCAGGCTG
  GAGACCTTGA CCCTGCGTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61805336	NES17735846	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs51951457					SNP	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61805336	NES17735846	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53626438 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5623	CpG island 5623	within coordinates
Gm33763	predicted gene, 33763	within coordinates
Msx2	msh homeobox 2	within coordinates
Rr281405	regulatory region 281405	within coordinates
Tssr122586	transcription start site region 122586	310 bp downstream
Tssr122587	transcription start site region 122587	333 bp downstream
Tssr122588	transcription start site region 122588	398 bp downstream
Tssr122589	transcription start site region 122589	420 bp downstream