rs51953560 SNP Detail

Summary

• ID
  rs51953560
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174315033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGCGGCGC AGTCCTGCCC
  AGTCTTCTTG GCTCAGAGCA ACCAAGCCCC GCCCCCCATG CTCGGCGCAA TCAAGTCCCT
  CCTTCGTGAA GGCTCAGTGC GCCGGCGCAG AGCCGAAAAG TGAGGCGGCC GGCCGGCGCC
  GCACTACGCA TGCGCGGGCC TTGGCGGCGG GACTTTTTGG CTGGTTTGGC GGGTTGCTGA
  W
  ATGTGTCTAA AGTTCTCATT GGATGTGGCT GAGCCTGGCG GCGTTTGCCA GAGTACGGTT
  TTGTGGTGTG GTCTTAGAGA GTTAGTCCCA CCTCTTCAAT CTAAGCAGTG GGGTGGCGGG
  ACAGGGGTGG TTTCAATCAG CACCCGTGCC CTTGCCAGCC CAGGGTTGGT TACCCTTGGT
  GGAACAGGCC ACCCAGACAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148343936	ENSMUSSNP5058324	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss320627897	CHEV_2_174298741	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51953560					SNP	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174315033 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12865	CpG island 12865	within coordinates
Gm38546	predicted gene, 38546	within coordinates
Prelid3b	PRELI domain containing 3B	299 bp upstream
Rr397557	regulatory region 397557	62 bp downstream
Rr572132	regulatory region 572132	1924 bp distal
Rr572133	regulatory region 572133	353 bp distal
Rr572134	regulatory region 572134	617 bp distal
Rr572135	regulatory region 572135	250 bp distal
Rr572136	regulatory region 572136	222 bp distal
Rr572137	regulatory region 572137	45 bp distal
Rr572138	regulatory region 572138	within coordinates
Tssr28035	transcription start site region 28035	304 bp upstream
Tssr28036	transcription start site region 28036	221 bp upstream