rs51954443 SNP Detail

Summary

• ID
  rs51954443
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185247329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTCCTCCG TGGGCTCCGG
  TGTCTGCACA CTTGGTCCCT GCCGGCAGTG CTAGATCAGG AGGCTGTAGA ACATTGAGAA
  GTGGGGTCTA GCTGGAGGAA GTGGGTCACT GGGGTCAGGA CCTTGAGGTT CACAGACAGA
  TGCTCCTGGT AGTACCCCTA CCATGCTCTC TTTGTGATGG TGGACTGTCT CCGCTCAAAG
  Y
  GTGAGCCCAG GCAAGCCCTT TCTCCTTTGA GTTGCTCCTT GTCTGGTTTG GGCACAGTGA
  CTGGAAGCGC CTGGGGCAAG CATAAACGTA TGTTACACAT GGCGCTGTAC ACAAGATGTG
  GCTCATGTTT GTGTTGCAAA CTGTGTTTCT CTTCGGCGTG GGGATTTGAG GGCAAGAAGA
  AAACAAAACA AAACAAAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146435000	ENSMUSSNP6451203	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320176798	CHEV_1_187339011	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51954443					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185247329 () rs orientation: forward

Symbol	Name	Function Class
Rr425406	regulatory region 425406	within coordinates