rs51956540 SNP Detail

Summary

• ID
  rs51956540
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81484639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGTGAATAT CAATTGGGTG GCTTAAATTT GACCTGAATG
  GGTTGGGCGT CATTCAGCTG TGAGCAGAGG GACCACACAG TGCACATAGA GTAACGATCT
  S
  TGTGTACTAG ACACCCTATG ACTACCCGAA GAAGTGCCTA CTGTGTGCAG GAAAAGTGCA
  GGGACGACTT TGCAATAGGG TGCAGGTTCT ATGGTCTGTG                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61292111	NES16906352	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51956540					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61292111	NES16906352	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81484639 () rs orientation: forward

Symbol	Name	Function Class
Ankrd24	ankyrin repeat domain 24	1195 bp downstream
Cpgi2012	CpG island 2012	58 bp proximal
Gm10778	predicted gene 10778	264 bp upstream
Rr402093	regulatory region 402093	38 bp upstream
Rr435748	regulatory region 435748	within coordinates
Rr435749	regulatory region 435749	265 bp proximal
Rr435750	regulatory region 435750	1402 bp proximal
Tssr94807	transcription start site region 94807	202 bp upstream