rs51956852 SNP Detail

Summary

• ID
  rs51956852
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:118573021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGCTATAG AAGTGAAACT
  CTGTCTCAAA AGAACAGTGG GGCGAGCGGT ACATATCAGT GTAATTCTGC ACTCTGAGGC
  AGGGGATCAT AGCCTTGAGG CCAGTTTGAG CTACATAAGC GATTCAGTCC CGGCCCCTCC
  CCACCACCAG TTGAACAAAA CAAAAGCAAA TGAGGGGTGG TGGTGCATAC TTTTGAGACG
  W
  GGAGGCATTA GAAAGAAGTT CAAGGCCAGT CTGGGCTAGC CTAAGCCAAA GGATACCTTT
  TCTCAAACAA ATCAAACAAC CAGCCCATAA CTCAATCATA TTAACAACCA ATCAAATAAA
  CAAACGTGCA ATTGCCACTT TGAAGCTGAG GGTAGGAACC GCTGGGATGA GATCATTGGG
  CACCCAGGGT GTCTGATTAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60831000	NES16020027	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51956852					SNP	T	T	T	T	T	A	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60831000	NES16020027	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:118573021 () rs orientation: forward

Symbol	Name	Function Class
Gm71507	predicted gene, 71507	1282 bp downstream
Rr366840	regulatory region 366840	within coordinates
Rr618904	regulatory region 618904	1045 bp distal
Rr618905	regulatory region 618905	1165 bp distal
Rr618906	regulatory region 618906	within coordinates
Rr618907	regulatory region 618907	1599 bp proximal
Tssr48424	transcription start site region 48424	884 bp upstream
Tssr52899	transcription start site region 52899	108 bp upstream