rs51956953 SNP Detail

Summary

• ID
  rs51956953
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:160901848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGTCTTTCC ATGTGTTCAC TTAAAGCCAT
  TTCATGTCTT TCTTCAGTTT TTGAATTTGG TAAAGCCAGA TTAGAGACAG CTCTTTAGGG
  TTATTGTGAA GCCCCTGCTG TGCTCAGCCT TCATGGTGGT CTCGGAAGTC TCCTTTGTAA
  Y
  GTGCATATTA CATTATTTGA CTTATTCTAG AGTTCATACT GAAAGGTTTC TTGTATTGAT
  ATTTCTTTTC ACAATAAGAG AATAGTAGCT AAGATAAGAA ACGAGTATGA TGTAGAAAAG
  GTGGAGAGTA GAAAAGAGAG AGAGTAAGAA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145905404	ENSMUSSNP3401081	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss320080210	CHEV_1_163004409	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51956953					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:160901848 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cenpl	centromere protein L			Intron
				Noncoding-Transcript-Variant
Rr421753	regulatory region 421753			1533 bp distal
Rr421754	regulatory region 421754			1956 bp proximal