rs51957567 SNP Detail

Summary

• ID
  rs51957567
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:49590925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTTTTCT TTTCTTTTCT
  TTTCCTTTTC TTTTCTCTTC TCTTCTTTTC TTTCTTTCTT TTTTTTTTTT GAGGGATTTC
  ATCATGTAGC CATGAAAACC TCAAAGTTCT AGGAAACTGC AAACTATTTG GAAACTCTGT
  GCCAACCGTT ACAGCCAAAG GTCAGACTTA TTTCTTCCTA TGTCACAATT TCTCGGCTAA
  K
  AATTTCCTGT GTGGCTTTTG AGTCACCGTT CATCCTGGGT TTTCTCCGGT AAGGTGATAG
  AGTTATATTT TCCCTCCTGT CCAGTCGCTT TTCTTTTACC TTCTGTAAAA TCTTCTGCAG
  GGTATGCTAC CCATGAATCC CAATGTGCTA GTAAAAGTAC AAAGTTGTTC ATACAGCCAC
  CGGTAGTGCT GGGATATTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60460814	NES16446451	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51957567					SNP	G	G	G	G	G	T	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60460814	NES16446451	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:49590925 () rs orientation: forward

Symbol	Name	Function Class
Gm15518	predicted gene 15518	within coordinates
Rr516710	regulatory region 516710	1754 bp distal
Rr516711	regulatory region 516711	210 bp distal
Rr516712	regulatory region 516712	778 bp proximal
Rr516713	regulatory region 516713	1855 bp proximal
Tssr138713	transcription start site region 138713	50 bp upstream
Tssr141324	transcription start site region 141324	1853 bp upstream
Tssr141325	transcription start site region 141325	1824 bp upstream
Tssr141326	transcription start site region 141326	1783 bp upstream
Tssr141327	transcription start site region 141327	1760 bp upstream
Tssr141328	transcription start site region 141328	740 bp upstream
Tssr141329	transcription start site region 141329	228 bp downstream
Tssr141330	transcription start site region 141330	243 bp downstream
Tssr141331	transcription start site region 141331	256 bp downstream
Tssr141332	transcription start site region 141332	284 bp downstream
Tssr141333	transcription start site region 141333	1119 bp downstream
Tssr141334	transcription start site region 141334	1274 bp downstream