rs51957611 SNP Detail

Summary

• ID
  rs51957611
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57529168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACTGCCT GGGGTGCAGC
  CAATGTCTGC CTTCTCTACC ACATCCCAGA TCTGCAAGTG AGGTGGTATG GGGTGGATGG
  AGGGGATAGA AAAAGGCCCA CCACCAACCC GTCATCAAGC TCAACCCAGC CGTCCCTGCC
  CCTCCTTACC CTAACATTCA GCCCTTGACA GACTCAGCTT CTAGCATCCA CCACACTCCA
  R
  GTTGGGCTGA GAGATGCAAG CACTTACCTT GCTCTGTGTG AGTTTGTTCT TCTTGTTCAG
  CACAAACACT CCCTTGTCCA CAGCCACTAG CCCCACTCGG GCCCCCTGGT TTCCTTCAAT
  CCTGAGTGTC GTTTGTTGCC CAGGTGCGAG ATGGTTATCT CTTGGGTCAC CCTTCACCAC
  CAGCTATAGA GAGGATGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62812214	NES17355752	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51957611					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62812214	NES17355752	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57529168 () rs orientation: forward

Symbol	Name	Function Class
C3	complement component 3	within coordinates
Gm65552	predicted gene, 65552	658 bp downstream
Tssr145377	transcription start site region 145377	22 bp upstream
Tssr145378	transcription start site region 145378	944 bp upstream
Tssr145379	transcription start site region 145379	1025 bp upstream
Tssr145380	transcription start site region 145380	1054 bp upstream
Tssr145381	transcription start site region 145381	1120 bp upstream
Tssr145382	transcription start site region 145382	1650 bp upstream
Tssr145383	transcription start site region 145383	1766 bp upstream
Tssr145384	transcription start site region 145384	1899 bp upstream
Tssr148934	transcription start site region 148934	1972 bp upstream
Tssr148935	transcription start site region 148935	1116 bp upstream
Tssr148936	transcription start site region 148936	1095 bp upstream
Tssr148937	transcription start site region 148937	1074 bp upstream
Tssr148938	transcription start site region 148938	768 bp upstream
Tssr148939	transcription start site region 148939	239 bp upstream
Tssr148940	transcription start site region 148940	82 bp downstream
Tssr148941	transcription start site region 148941	162 bp downstream
Tssr148942	transcription start site region 148942	663 bp downstream
Tssr148943	transcription start site region 148943	703 bp downstream
Tssr148944	transcription start site region 148944	723 bp downstream
Tssr148945	transcription start site region 148945	751 bp downstream
Tssr148946	transcription start site region 148946	776 bp downstream
Tssr148947	transcription start site region 148947	1015 bp downstream
Tssr148948	transcription start site region 148948	1067 bp downstream
Tssr148949	transcription start site region 148949	1122 bp downstream
Tssr148950	transcription start site region 148950	1687 bp downstream
Tssr148951	transcription start site region 148951	1728 bp downstream
Tssr148952	transcription start site region 148952	1769 bp downstream
Tssr148953	transcription start site region 148953	1953 bp downstream