rs51958039 SNP Detail

Summary

• ID
  rs51958039
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48651166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCC AAAATAGGGC TACCTGAGTA
  R
  GGAGCCTCAC CTGGAGAGCT GTCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133165763	ENSMUSSNP3464271	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
ss321794328	CHEV_6_48624231	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51958039					SNP	G	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48651166 () rs orientation: forward

Symbol	Name	Function Class
Gimap9	GTPase, IMAP family member 9	1918 bp upstream
Gm46958	predicted gene, 46958	1600 bp downstream
Rr629719	regulatory region 629719	482 bp proximal
Rr629720	regulatory region 629720	1416 bp proximal
Tssr56160	transcription start site region 56160	567 bp upstream
Tssr56161	transcription start site region 56161	969 bp upstream
Tssr56162	transcription start site region 56162	1882 bp upstream
Tssr56163	transcription start site region 56163	1928 bp upstream
Tssr56164	transcription start site region 56164	1961 bp upstream