rs51958598 SNP Detail

Summary

• ID
  rs51958598
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156194704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGTGGCG GCTGCAGCGA
  CGCCGTAAAG GCCGCGGGTA GCGCAGACTC TGGGACTCTG AGACTAATGC AGGGCCTAGC
  GGGGCAGCGC CTCCCTCGCT GCCTGCCATC TTGTCAGTGA GGAGGCGGTA CGGACGGAGC
  CGGGAGTGGA GCGTGGTGGA TGGAGGGACG GGGAGGTTGC AGGGGACATG GACCGCGAGC
  W
  GCACGGAGGT GGAGGACGTG GGAGATGGGT TGGTGTCGTG AAGGGGGCGA GGTCCTCCCG
  CGGGATGTGC TCTTCTTGAG GACTTTGCCG TGAGAGCCAC TATATCAGCG AGTTACACAT
  CCTCCCGCGT TTCGGCGCAT TAAATGTAAA GGTGTCGAAC TTAGCCCAGT ATTTTGTTTT
  TTTATTGTTT TGGGAAAGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321445500	CHEV_4_155484356	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs51958598					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156194704 () rs orientation: forward

Symbol	Name	Function Class
9430015G10Rik	RIKEN cDNA 9430015G10 gene	within coordinates
Cpgi15500	CpG island 15500	within coordinates
Gm69135	predicted gene, 69135	509 bp upstream
Rr398931	regulatory region 398931	206 bp downstream
Tssr40790	transcription start site region 40790	243 bp downstream
Tssr40791	transcription start site region 40791	194 bp downstream