rs51959146 SNP Detail

Summary

• ID
  rs51959146
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:113393513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACTC TCTCCACATC CTGCCTTAGG
  M
  CACCTGAACC CCACAGTCCC CAGAT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss138742394	ENSMUSSNP4370607	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss324175497	CHEV_12_114668104	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51959146					SNP	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:113393513 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Ighd4-1	immunoglobulin heavy diversity 4-1	635 bp downstream
Ighg	Immunoglobulin heavy chain (gamma polypeptide)	within coordinates
Ighj1	immunoglobulin heavy joining 1	60 bp upstream
Ighj2	immunoglobulin heavy joining 2	378 bp upstream
Ighj3	immunoglobulin heavy joining 3	761 bp upstream
Ighj4	immunoglobulin heavy joining 4	1326 bp upstream
Rr554	regulatory region 554	1921 bp distal
Tssr115504	transcription start site region 115504	334 bp upstream
Tssr118005	transcription start site region 118005	1346 bp upstream
Tssr118006	transcription start site region 118006	1315 bp upstream
Tssr118007	transcription start site region 118007	1269 bp upstream
Tssr118008	transcription start site region 118008	1242 bp upstream
Tssr118009	transcription start site region 118009	1231 bp upstream
Tssr118010	transcription start site region 118010	1093 bp upstream
Tssr118011	transcription start site region 118011	995 bp upstream
Tssr118012	transcription start site region 118012	760 bp upstream
Tssr118013	transcription start site region 118013	745 bp upstream
Tssr118014	transcription start site region 118014	641 bp upstream
Tssr118015	transcription start site region 118015	545 bp upstream
Tssr118016	transcription start site region 118016	391 bp upstream
Tssr118017	transcription start site region 118017	51 bp upstream
Tssr118018	transcription start site region 118018	483 bp downstream
Tssr118019	transcription start site region 118019	500 bp downstream
Tssr118020	transcription start site region 118020	556 bp downstream
Tssr118021	transcription start site region 118021	696 bp downstream
Tssr118022	transcription start site region 118022	728 bp downstream
Tssr118023	transcription start site region 118023	893 bp downstream