rs51959209 SNP Detail

Summary

• ID
  rs51959209
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31094992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATGTGTGT GATGTAAGGA
  TGTGTATATG TGTGTGTGTG TATTTGTGTG TATAGATAAG TGTGTATGTG TACATGTGTG
  ATATGTGTAT TTATGTATGG GGTATGTGTA TATTTATATC GGGGACGTGT CAGAAAATCC
  ACTGGGACAA CTGATCCTGG AATTTATTGT AATTTTATTT AATATTCTTT CATTTTTTTT
  K
  TGTGTAGTAA CTTTGAGGCT CAGAGAGCTC TGGCTCCCCG GCTCTCCTAC CCGAGCCCAA
  TTCTGTGGGA AATAATGAAA CACATATCTA GGTAGCAAAT GGAAAAAGCA AAAACAAACT
  CCATCAAACC AAATTAGGTT ACATGCCGAA CGTCTTAAAC GGCAGAGTCT TTAGAAAGTG
  ATGCGATTTC TTACTCAGTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145451175	ENSMUSSNP3847398	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51959209					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31094992 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8937	CpG island 8937	1306 bp distal
Dnah8	dynein, axonemal, heavy chain 8	256 bp downstream
Gm9937	predicted gene 9937	734 bp upstream
Gm50252	predicted gene, 50252	within coordinates
Rr330583	regulatory region 330583	1192 bp distal
Rr337287	regulatory region 337287	1548 bp proximal
Rr341200	regulatory region 341200	992 bp distal
Tssr147267	transcription start site region 147267	982 bp upstream