rs51959827 SNP Detail

Summary

• ID
  rs51959827
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:8472394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAGTGTTG CTACCTTTTA
  ACAAATGAGT TCTCCCTCAG CGAATATGAA ACAAAGTATC AAACGGGACA TTTCTTTTTC
  TGTGCAATTT TTAAAGTCTG AGGACTTTTA AAAAGGTATT TCCGTCTTAC ACCAACTTCC
  ATTGCCAAAG CCGCGAGAAA CAAGCTCCCA ACATCTAACT TACTCGTGAA CTAGAACTTG
  K
  TAAGATACAG AACTGGTATT TTTCTCCAGC ATCTACAGAT ACATTTGACC TATTAAAATG
  ACACCTCGCT CATTACACAG TCAAACATCA TGGTACAAAC AGCCAATGAC AATCCTGGGA
  CTCACTAAGA TCTGCCCTGA CAAGAAAGGA TGGCACCTTC TATGTGTGTA TATGTATGTG
  TGTTTTAAAC CTCCCAAAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss147049414	ENSMUSSNP6155502	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs51959827					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:8472394 () rs orientation: forward

Symbol	Name	Function Class
AW557046	expressed sequence AW557046	within coordinates
Cpgi6933	CpG island 6933	576 bp proximal
Nipbl	NIPBL cohesin loading factor	within coordinates
Rr369900	regulatory region 369900	within coordinates
Rr499033	regulatory region 499033	376 bp distal
Rr499034	regulatory region 499034	within coordinates
Rr499035	regulatory region 499035	1543 bp proximal
Tssr4546	transcription start site region 4546	1955 bp downstream
Tssr130591	transcription start site region 130591	695 bp upstream
Tssr130592	transcription start site region 130592	1823 bp upstream
Tssr133664	transcription start site region 133664	1254 bp downstream
Tssr133665	transcription start site region 133665	1308 bp downstream
Tssr133666	transcription start site region 133666	1525 bp downstream
Tssr133667	transcription start site region 133667	1539 bp downstream
Tssr133668	transcription start site region 133668	1699 bp downstream