rs51959967 SNP Detail

Summary

• ID
  rs51959967
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:71228633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGACA GGTCCTCGTA TAGGGACAGG
  R
  CAATGCATAG ACAGACCGGT TCCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145131467	ENSMUSSNP5333467	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss322701503	CHEV_8_73299888	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51959967					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71228633 () rs orientation: forward

Symbol	Name	Function Class
2010320M18Rik	RIKEN cDNA 2010320M18 gene	873 bp upstream
Cpgi20499	CpG island 20499	1181 bp distal
Cpgi20500	CpG island 20500	within coordinates
Gm3598	predicted gene 3598	1565 bp downstream
Pik3r2	phosphoinositide-3-kinase regulatory subunit 2	within coordinates
Rr186787	regulatory region 186787	within coordinates
Rr368551	regulatory region 368551	1118 bp upstream
Rr400915	regulatory region 400915	624 bp upstream
Tssr77827	transcription start site region 77827	773 bp upstream
Tssr77828	transcription start site region 77828	789 bp upstream
Tssr77829	transcription start site region 77829	858 bp upstream
Tssr77830	transcription start site region 77830	1343 bp upstream
Tssr81673	transcription start site region 81673	645 bp downstream
Tssr81674	transcription start site region 81674	661 bp downstream
Tssr81675	transcription start site region 81675	731 bp downstream