rs51960387 SNP Detail

Summary

• ID
  rs51960387
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:60691512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAATTTGCT GGGAAAGAAA
  ATGCCTGGAG TATATATCCT GATTCATAAC CAAGAATAAA ACATAATGAG AAGAGAAAAA
  AACAGTCAAA TTTATCAGTA TCCTGATTTT TTTTAAACAA TTCACAAATA AAATCTAATT
  CTCCAAACAA ATCCATTGGA TAACTATGAT CACGCTCAAT TCTATTTAAA TTGTTTTTTT
  W
  AAATGTCTAG ACAAGCACAT GATATCAAGA GTCTTCAACA CAGTGGATCC CATTTTAAAA
  AGAAAAAAAA AAGAAAGAAA GAAAAAGGAA ACTAGTAGTC CTTAAATTTT CTTAGCTTTT
  CATAGTATAT GTCATATAAA ATTAAAGTTT TGCTTCCAAA AAAATATGTT GTCACGTGGT
  TGTCCTTGTC CCATGGTGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63528667	NES17014297	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51960387					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63528667	NES17014297	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:60691512 () rs orientation: forward

Symbol	Name	Function Class
Lratd2	LRAT domain containing 1	within coordinates
Tssr134471	transcription start site region 134471	53 bp downstream
Tssr134472	transcription start site region 134472	177 bp downstream
Tssr134473	transcription start site region 134473	474 bp downstream