rs51960681 SNP Detail

Summary

• ID
  rs51960681
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:35016669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCACT CCCATCAGCG GTATGGACAC
  M
  CAGTAGATAA ACCTAGTCAT TAAGT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss60993443	NES16128401	PERLEGEN	MM_PANEL2	f	SNP	C	A	C	A	C		C	A		C	C		A
ss148806695	ENSMUSSNP5186689	ENSEMBL	ENSEMBL_Sanger	f	SNP		A				A
ss322156913	CHEV_7_36102263	CHEVERUD	SCREENING_POP	f	SNP									A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs51960681					SNP	C	A	C	A	C	A	C	A	A	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60993443	NES16128401	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:35016669 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18869	CpG island 18869	823 bp proximal
Gpatch1	G patch domain containing 1	within coordinates
Rr645358	regulatory region 645358	1184 bp proximal
Rr645359	regulatory region 645359	1186 bp proximal
Tssr72030	transcription start site region 72030	1164 bp downstream