rs51960824 SNP Detail

Summary

• ID
  rs51960824
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:62021318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCAGAGTC CCGTCTTAGT
  TACTTTTCTC ATTGCTATGA TAAAACACCA GACAGAAGCA ATTTAAGAAA GGGTTTATTT
  TTGGTCCATG TTTTGACCTC ACAATCCTCC TGCCTCCACC CCCTGAGTGC TGGATTACAG
  GCATGGATCA GCCCCCATGC TCAGCAAATT ACTATTTACT TGTGCTGTGC ATATTTCAAA
  M
  GGAAGTTTCT TCAACAGTTT TTTTTTTTTT AAATTTTCAC AGGAAACCAG GGTTCCTAAA
  CACATTTTTC TTTTTAAGAT TTATTTATTT TATGTATATG TGTACTCTGT AGCTGTCTTC
  AGACACACCA GAACAGGGTG GGTGTCCATT ACAGATGGTT GTGAGCCACC ATGTGGTTGC
  TGGGAATTGA ACTCAGGACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61279726	NES16893297	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs51960824					SNP	A	A	A	A	A	C	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61279726	NES16893297	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:62021318 () rs orientation: forward

Symbol	Name	Function Class
Rr215628	regulatory region 215628	1718 bp distal
Rr215629	regulatory region 215629	1083 bp proximal
Rr228219	regulatory region 228219	1664 bp distal
Rr228220	regulatory region 228220	805 bp proximal
Tspan15	tetraspanin 15	within coordinates
Tssr97791	transcription start site region 97791	1947 bp downstream