rs51962325 SNP Detail

Summary

• ID
  rs51962325
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:78183637 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGAGGGCA AGGTGCTGCA
  TGCCTTTAAT CCCACCACTC AGGAGGAAGA GGCAGGCAGA TCTCTGAATT CCAGGACAGT
  TTGGCCTACA CGAGAGAGTT CCAGAATTAC ATGGGCTACA CAGTGAAACC CTGTCTCCAA
  CAACAACAAC AAAAGATAGA AGTTGGATGT TGCCATGTTA AATCATGAAA TCTCTTGGGA
  W
  TAATGAGTGT ATGTGAATAG CATGTGAAGG ACATATGAAT AACACCTCTT CTTGGAGAAG
  TTCTGGAGCC CTAGCCTGGT GGTATATACA CTGGGGAGGC AGAGCCAGTA GGATCAAGAG
  CTCAAGGTTA AACTAGGCTT TATATTGAGT TTGAGGCTAA CCTGGGCTAT GTGGAACCCT
  GTCTCAACAA CACTAACAAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss144741471	ENSMUSSNP3701264	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs51962325					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:78183637 () rs orientation: forward

Symbol	Name	Function Class
D1Mit215	DNA segment, Chr 1, Massachusetts Institute of Technology 215	493 bp distal
Rr413697	regulatory region 413697	1153 bp proximal