rs51962454 SNP Detail

Summary

• ID
  rs51962454
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127819424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTAAGGGG AGGTGAAATG
  CTGCAAGGAA GCTCTTTAAA ACGGGAAGTC GAGAATTCAA AGTAGCTTCA GGAAGTCCCT
  GAAACAGATT AGATTAGTTT CATTATCCCC ACCCCCAGCC CAGTAAACAG TAAAGGCTGC
  TAAGAGTCAC TCTCAGAGAA GACCAGCTGC CTGGAGGAGA TTCAGATTAA CTGAACCACC
  Y
  GGAAAGAACA CTGCAACCTA CTGTGCTGCC TGTAGCTATG CACAGTGCTA CAGGGCTTCA
  GCTTTTGTGA ATTGTCACCC ATGCTGGGGT GGCCTTTGGT GATGCAACTG TCTTTGAGTA
  ATTTTTGTAG TAATAATTTA AGTAACCCTT CACCCATATT CCTGTGCAAT TCATTGGTTC
  ACCAGACTCA ACTACGGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145887694	ENSMUSSNP7146908	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs51962454					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127819424 () rs orientation: forward

Symbol	Name	Function Class
Gm44850	predicted gene 44850	within coordinates
Itgad	integrin, alpha D	within coordinates
Tssr75086	transcription start site region 75086	616 bp downstream
Tssr75087	transcription start site region 75087	638 bp downstream