rs51962850 SNP Detail

Summary

• ID
  rs51962850
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127685622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTCAAATA TACACTTGAG
  GGAGAAGCTG TTAAATGGCT TCCTTACATA CATCTATTAC TGATCTATTA GTACTATCCT
  AAAGGGCCAT TATAGTGAAT GATATGGGTT AGTGCACTTG TATTCCCTCT ATTTCTCTGC
  CAAACCGTGG TCTGTGGTCA TAGCACTGCA CCACGTGAGA CTCTGGTAAG AGATGTCAAG
  K
  GTCAGACCCT TACTGAAAAT TAGCTACATC AAAATCTTTG TTAGCCAGAG ATGACAGGTC
  ATGCACGTTA GCTGAGAGTG CTGCCACAGC CGCCCTCCGC CTGGTCTCTC GGTTAACTGT
  GGGTGTGAAA AACCTTAAAG ACTACTTGTC ACATTTCTTC TCAGTTCCGG TTTGACAAAG
  TGGCTCCCGC AGCTAACACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135874373	ENSMUSSNP1937866	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
ss320957952	CHEV_3_127594891	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51962850					SNP	T	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127685622 () rs orientation: forward

Symbol	Name	Function Class
Fam241a	family with sequence similarity 241, member A	Intron
Rr584893	regulatory region 584893	1652 bp distal
Rr584894	regulatory region 584894	260 bp distal
Rr584895	regulatory region 584895	1367 bp proximal