rs51964549 SNP Detail

Summary

• ID
  rs51964549
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134296459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CAAATGGAGC ACACAGAATC TTTAAAGACA GAGTGTAAAC
  TGTCGGGTGT AGTGGTGTAC ACCTTAATCC TAGCACTCGG AAGGCAGAGA TGGGTCAGTT
  Y
  TAGGCCAGTC AGGTCTATAC AATGAGACTT TGTCTTAGAA AGGAAAAAGA AAAAAAGGTG
  TAAGTAGGAA GATGGAAAAC TCAAGGTCTT CCTCAGCTGC A                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss144502857	ENSMUSSNP6395823	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51964549					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134296459 () rs orientation: forward

Symbol	Name	Function Class
Gm43481	predicted gene 43481	within coordinates
Gtf2i	general transcription factor II I	within coordinates
Rr621980	regulatory region 621980	1770 bp proximal
Tssr53620	transcription start site region 53620	1527 bp upstream
Tssr53621	transcription start site region 53621	987 bp upstream
Tssr53622	transcription start site region 53622	1612 bp downstream