rs51964657 SNP Detail

Summary

• ID
  rs51964657
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80633637 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAA GCCGCCCGGT TCTTCCTGGG
  M
  CACTCTGCAG CGCTCCAGCA ACAGG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
ss61290503	NES16901608	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
rs51964657					SNP	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61290503	NES16901608	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80633637 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1908	CpG island 1908	within coordinates
Plekhj1	pleckstrin homology domain containing, family J member 1	within coordinates
Rr435393	regulatory region 435393	within coordinates
Rr435394	regulatory region 435394	406 bp proximal
Rr435395	regulatory region 435395	813 bp proximal
Rr435396	regulatory region 435396	940 bp proximal
Sf3a2	splicing factor 3a, subunit 2	932 bp upstream
Tssr94606	transcription start site region 94606	150 bp upstream
Tssr94607	transcription start site region 94607	228 bp upstream
Tssr94608	transcription start site region 94608	810 bp upstream
Tssr94609	transcription start site region 94609	827 bp upstream
Tssr94610	transcription start site region 94610	849 bp upstream
Tssr94611	transcription start site region 94611	1099 bp upstream
Tssr98506	transcription start site region 98506	1430 bp upstream
Tssr98507	transcription start site region 98507	58 bp downstream
Tssr98508	transcription start site region 98508	116 bp downstream
Tssr98509	transcription start site region 98509	166 bp downstream
Tssr98510	transcription start site region 98510	189 bp downstream
Tssr98511	transcription start site region 98511	388 bp downstream
Tssr98512	transcription start site region 98512	417 bp downstream
Tssr98513	transcription start site region 98513	673 bp downstream
Tssr98514	transcription start site region 98514	1052 bp downstream